API

• Inference module
• Data (data package)
  • Base class of DataHolder
    • DataHolder
  • Input data types
    • SFSDataHolder
    • VCFDataHolder
• Models (models package)
  • Base class Model
    • Model
  • Combinations of variables
    • Base class VariablesCombination
    • Base class BinaryOperation
    • Classes of different binary operations
  • Events
    • Epoch
    • Event
    • Split
  • Demographic models
    • Base class DemographicModel
    • Class EpochDemographicModel
    • Class StructureDemographicModel
    • Class CustomDemographicModel
• Engines (engines package)
  • Base class Engine
    • Engine
    • all_engines()
    • get_engine()
    • register_engine()
  • Class DadiOrMomentsEngine
    • DadiOrMomentsEngine
    • read_sfs_data()
    • read_vcf_data()
  • Dadi engine
    • DadiEngine
  • Moments engine
    • MomentsEngine
• Code generation (code_generator package)
  • Generator of dadi code
    • print_dadi_code()
  • Generator of moments code
    • print_moments_code()
• Optimizers (optimizers package)
  • Base Classes
  • Global optimizers
    • Registered global optimizers
    • Genetic algorithm
    • Bayesian optimization
  • Local optimizers
    • Registered local optimizers
  • Combinations of optimizers
  • Optimizer result
  • Linear constrain
• Command line interface (cli package)
  • Argument parsing
  • SettingsStorage
• Core of runs (core package)
  • CoreRun
  • SharedDict
  • Core
  • Functions for drawing and code generation in main function of core
• Utils and variables (utils package)
  • Variables
    • ContinuousVariable
    • DiscreteVariable
    • Dynamic
    • DynamicVariable
    • Exp
    • FractionVariable
    • Lin
    • MigrationVariable
    • PopulationSizeVariable
    • SelectionVariable
    • Sud
    • TimeVariable
    • Variable
  • Variable Pool
    • VariablePool
  • Distributions
    • DemographicGenerator
    • custom_generator()
    • generator_for_Nanc()
    • rescale_generator()
    • trunc_lognormal()
    • trunc_lognormal_3_sigma_rule()
    • trunc_lognormal_sigma_generator()
    • trunc_normal()
    • trunc_normal_3_sigma_rule()
    • trunc_normal_sigma_generator()
    • uniform_generator()
  • Utils
    • CacheInfo
    • StdAndFileLogger
    • WeightedMetaArray
    • abspath()
    • apply_transform()
    • bcolors
    • cache_func()
    • check_dir_existence()
    • check_file_existence()
    • choose_by_weight()
    • deserialize_meta_array()
    • ensure_dir_existence()
    • ensure_file_existence()
    • eval_wrapper()
    • exponent_transform()
    • fix_args()
    • float_repr()
    • get_LOO_score()
    • get_aic_score()
    • get_best_kernel()
    • get_claic_score()
    • get_correct_dtype()
    • get_loo_score_for_optimizer()
    • get_loo_scores_for_kernels()
    • get_mu_and_sigma_rassmusen()
    • get_one_score()
    • ident_transform()
    • is_pickleable()
    • logarithm_transform()
    • lru_cache()
    • module_name_from_path()
    • normalize()
    • run_f_and_save_result_into_queue()
    • serialize_meta_array()
    • sort_by_other_list()
    • timeout()
    • transform_smac()
    • update_by_one_fifth_rule()
    • variables_values_repr()
    • warning_format()
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