GADMA citations
If you use GADMA in your research please cite:
[Noskova2020] | Ekaterina Noskova, Vladimir Ulyantsev, Klaus-Peter Koepfli, Stephen J O’Brien, Pavel Dobrynin, GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data, GigaScience, Volume 9, Issue 3, March 2020, giaa005, https://doi.org/10.1093/gigascience/giaa005 |
If you use GADMA2 please cite:
[Noskova2023GADMA2] | Ekaterina Noskova, Nikita Abramov, Stanislav Iliutkin, Anton Sidorin, Pavel Dobrynin, and Vladimir Ulyantsev, GADMA2: more efficient and flexible demographic inference from genetic data, GigaScience, Volume 12, August 2023, giad059, https://doi.org/10.1093/gigascience/giad059 |
If you use Bayesian optimization implemented GADMA please cite:
[Noskova2023BO] | Ekaterina Noskova and Viacheslav Borovitskiy, Bayesian optimization for demographic inference, G3 Genes|Genomes|Genetics, Volume 13, Issue 7, July 2023, jkad080, https://doi.org/10.1093/g3journal/jkad080 |
Engine citations
If you use dadi
as engine in GADMA please cite:
[Gutenkunst2009] | RN Gutenkunst, RD Hernandez, SH Williamson, CD Bustamante “Inferring the joint demographic history of multiple populations from multidimensional SNP data” PLoS Genetics 5:e1000695 (2009). |
If you use inbreeding inference with dadi
engine in GADMA please cite:
[Blischak2020] | Paul D Blischak, Michael S Barker, Ryan N Gutenkunst, Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data, Molecular Biology and Evolution, Volume 37, Issue 7, July 2020, Pages 2124–2136, https://doi.org/10.1093/molbev/msaa042 |
If you use moments
as engine in GADMA please cite:
[Jouganous2017] | Jouganous, J., Long, W., Ragsdale, A. P., & Gravel, S. (2017). Inferring the joint demographic history of multiple populations: beyond the diffusion approximation. Genetics, 206(3), 1549-1567. |
If you use moments.LD
as engine in GADMA please cite:
[Ragsdale2019] | Ragsdale, A. P., & Gravel, S. (2019) Models of archaic admixture and recent history from two-locus statistics. PLoS Genetics, 15(6), e1008204 (2019). |
[Ragsdale2020] | Ragsdale, A. P., & Gravel, S. (2020) Unbiased estimation of linkage disequilibrium from unphased data. Molecular Biology and Evolution 37.3 (2020): 923-932 (2020) |
If you use momi
as engine in GADMA please cite:
[Kamm2020] | Kamm, J., Terhorst, J., Durbin, R., and Song, Y.S. Efficiently inferring the demographic history of many populations with allele count data. Journal of the American Statistical Association, Vol. 115, No. 531, (2020) 1472-1487. |